dbCAN-seq: a database of CAZyme sequence and annotation

Gene clsuter ID: MGYG000000107_5|CGC7
Gene ID: MGYG000000107_03462
Location and strand information: 371351 - 372241 (+)
Family: 3.A.1.1.11
Protein type: TC
Protein description: Lactose transport system permease protein LacF

Gene clsuter ID: MGYG000000107_5|CGC7
Gene ID: MGYG000000107_03463
Location and strand information: 372234 - 373136 (+)
Family: 3.A.1.1.11
Protein type: TC
Protein description: L-arabinose transport system permease protein AraQ

Gene clsuter ID: MGYG000000107_5|CGC7
Gene ID: MGYG000000107_03464
Location and strand information: 373149 - 374276 (+)
Family: 3.A.1.1.11
Protein type: TC
Protein description: Trehalose import ATP-binding protein SugC

Gene clsuter ID: MGYG000000107_5|CGC7
Gene ID: MGYG000000107_03465
Location and strand information: 374293 - 375579 (+)
Family: 3.A.1.1.11
Protein type: TC
Protein description: Putative ABC transporter substrate-binding protein YesO

Gene clsuter ID: MGYG000000107_5|CGC7
Gene ID: MGYG000000107_03466
Location and strand information: 375651 - 376778 (+)
Family: PL22_1|PL22
Protein type: CAZyme
Protein description: Oligogalacturonate lyase
Protein isoelectric point: 5.9175
Protein molecular weight: 43048.21
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000000107_5|CGC7
Gene ID: MGYG000000107_03467
Location and strand information: 377122 - 378468 (-)
Family: 1.B.15.1.1
Protein type: TC
Protein description: hypothetical protein

Gene clsuter ID: MGYG000000107_5|CGC7
Gene ID: MGYG000000107_03468
Location and strand information: 378582 - 380015 (-)
Family: GH32
Protein type: CAZyme
Protein description: Sucrose-6-phosphate hydrolase
Protein isoelectric point: 5.1991
Protein molecular weight: 54351.97
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000000107_5|CGC7
Gene ID: MGYG000000107_03469
Location and strand information: 380034 - 381275 (-)
Family: 2.A.1.5.2
Protein type: TC
Protein description: Sucrose permease

Gene clsuter ID: MGYG000000107_5|CGC7
Gene ID: MGYG000000107_03470
Location and strand information: 381517 - 382512 (+)
Family: LacI
Protein type: TF
Protein description: Ribose operon repressor

Gene clsuter ID: MGYG000000107_5|CGC7
Gene ID: MGYG000000107_03471
Location and strand information: 382513 - 383931 (-)
Family: 2.A.1.1.2
Protein type: TC
Protein description: Arabinose-proton symporter

Gene clsuter ID: MGYG000000107_5|CGC7
Gene ID: MGYG000000107_03472
Location and strand information: 384243 - 385004 (-)
Family: null
Protein type: null
Protein description: 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase

Gene clsuter ID: MGYG000000107_5|CGC7
Gene ID: MGYG000000107_03473
Location and strand information: 385547 - 386722 (+)
Family: PL22_1|PL22
Protein type: CAZyme
Protein description: Oligogalacturonate lyase
Protein isoelectric point: 5.1353
Protein molecular weight: 44158.32
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000000107_5|CGC7
Gene ID: MGYG000000107_03474
Location and strand information: 387057 - 387752 (-)
Family: 1.B.35.1.7
Protein type: TC
Protein description: Oligogalacturonate-specific porin KdgM

Gene clsuter ID: MGYG000000107_5|CGC7
Gene ID: MGYG000000107_03475
Location and strand information: 387996 - 389171 (-)
Family: null
Protein type: null
Protein description: Acetyl-CoA acetyltransferase

Gene clsuter ID: MGYG000000107_5|CGC7
Gene ID: MGYG000000107_03476
Location and strand information: 389462 - 390334 (-)
Family: HTH_1
Protein type: TF
Protein description: HTH-type transcriptional regulator MetR

Gene clsuter ID: MGYG000000107_5|CGC7
Gene ID: MGYG000000107_03477
Location and strand information: 390431 - 390892 (+)
Family: 2.A.117.1.3
Protein type: TC
Protein description: hypothetical protein

Gene clsuter ID: MGYG000000107_5|CGC7
Gene ID: MGYG000000107_03478
Location and strand information: 391028 - 392257 (+)
Family: 2.A.42.2.5
Protein type: TC
Protein description: Inner membrane transport protein YqeG

Protein ID	eCAMI subfam	CAZyme substrate
MGYG000000107_03466	PL22_e0\|4.2.2.6	pectin
MGYG000000107_03468	GH32_e63\|3.2.1.26	fructan
MGYG000000107_03473	PL22_e0\|4.2.2.6	pectin

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CGC gene composition diagram

Gene composition table

Substrate predicted by eCAMI subfamilies is pectin

Substrate predicted by dbCAN-PUL is pectin download this fig

Genomic location

Protein ID	Protein Name	Type	Start	End	Strand	Signature
MGYG000000107_03462	Lactose transport system permease protein LacF	TC	371351	372241	+	3.A.1.1.11
MGYG000000107_03463	L-arabinose transport system permease protein AraQ	TC	372234	373136	+	3.A.1.1.11
MGYG000000107_03464	Trehalose import ATP-binding protein SugC	TC	373149	374276	+	3.A.1.1.11
MGYG000000107_03465	Putative ABC transporter substrate-binding protein YesO	TC	374293	375579	+	3.A.1.1.11
MGYG000000107_03466	Oligogalacturonate lyase	CAZyme	375651	376778	+	PL22_1\| PL22
MGYG000000107_03467	hypothetical protein	TC	377122	378468	-	1.B.15.1.1
MGYG000000107_03468	Sucrose-6-phosphate hydrolase	CAZyme	378582	380015	-	GH32
MGYG000000107_03469	Sucrose permease	TC	380034	381275	-	2.A.1.5.2
MGYG000000107_03470	Ribose operon repressor	TF	381517	382512	+	LacI
MGYG000000107_03471	Arabinose-proton symporter	TC	382513	383931	-	2.A.1.1.2
MGYG000000107_03472	2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase	null	384243	385004	-	adh_short_C2
MGYG000000107_03473	Oligogalacturonate lyase	CAZyme	385547	386722	+	PL22_1\| PL22
MGYG000000107_03474	Oligogalacturonate-specific porin KdgM	TC	387057	387752	-	1.B.35.1.7
MGYG000000107_03475	Acetyl-CoA acetyltransferase	null	387996	389171	-	Thiolase_N\| Thiolase_C
MGYG000000107_03476	HTH-type transcriptional regulator MetR	TF	389462	390334	-	HTH_1
MGYG000000107_03477	hypothetical protein	TC	390431	390892	+	2.A.117.1.3
MGYG000000107_03478	Inner membrane transport protein YqeG	TC	391028	392257	+	2.A.42.2.5
Protein ID	Protein Name	Type	Start	End	Strand	Signature